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Topics in Platform-Based Development: Parallel Distributed Computing: GPU Programming

Course Details

Course Number
CMPS 4563
Section Number
CMPS 4563
Semester
Fall 2016
Location
Bolin Hall
Classroom Number
213
Days & Times

Monday and Wednesdays – 1:00 pm to 2:20 pm

Professor
Dr. Eduardo Colmenares-Diaz (view Profile)

Course Attachments

Textbooks

Course Objectives

A practical introduction to the principles of parallel computing, parallel algorithm development and analysis, as well as, design, implementation, and evaluation of parallel programs by using and targeting and adequate balance between multicore CPU’s and many-core Graphics Processing Units (GPU’s). 

Course Expectations

Day

Week

Potential Topics

M

Aug 29

Syllabus, TACC, account, Why Parallel Computing is important, General Ideas

W

Aug 31

Chapter 1: - Introduction, Project Management and Documentation

 

 

 

M

Sep 5 - Labor Day -

No class

 

Chapter 2: – History of GPU Computing, Project Management and Documentation

W

Sep 7

 

 

 

M

Sep 12

C Reinforcement: -  Basic C, Functions in C, Arrays, Pointers,

W

Sep

 

 

 

M

Sep 19

C Reinforcement: - Bitwise operations (in C), the preprocessor, data structures, dynamic memory allocation, Linked Lists

W

Sep 21                   HMK1

 

 

 

M

Sep 26

Parallel Concepts: Speedup, Efficiency, Scalability, Granularity, Performance Analysis.

Chapter 3: - Introduction To Data Parallelism and CUDA C

W

Sep 28                    

 

 

 

M

Oct 3                

Chapter 3: - Introduction To Data Parallelism and CUDA C

W

Oct 5                       HMK2

 

 

 

M

Oct 10

Chapter 4: - Data Parallel Execution Model

 

W

Oct 12                    

 

 

 

M

Oct 17                    HMK3

Chapter 4: - Data Parallel Execution Model

Midterm

W

Oct 19               Midterm

 

 

 

M

Oct 24                

Chapter 5: - CUDA Memories

W

Oct 26                

 

 

 

M

Oct 31                    HMK4

Chapter 5: - CUDA Memories

Chapter 6: - Performance Considerations

W

Nov 2

 

 

 

M

Nov 7

Chapter 13: - Parallel Programming and Computational Thinking

Chapter 8: - Parallel Patterns, Convolution

W

Nov 9                    

 

 

 

M

Nov 14                   HMK5

Chapter 8: - Parallel Patterns, Convolution

W

Nov 16

Chapter 10: - Parallel Patterns, Sparse Matrix – Vector Multiplication

 

 

 

M

Nov 21

Introduction to Distributed Memory Programming with MPI - Point to Point Comm. (Blocking and Non-Blocking)

W

Nov 23 –Day before Thanksgiving-No class

 

 

 

M

Nov 28

MPI: Collective Communications, Hybrid MPI+CUDA

W

Nov 30                   HMK6

Hybrid MPI+CUDA

 

 

 

M

Dec 5

Project – Student Presentations

W

Dec 7

Project – Student Presentations

 

 

 

 

Grading Standards

Grading Policy: The final grade for this course will be based on participation, projects, and exams, as described below:

Evaluation Process

 

Attendance                                                 Total: 5   %

Quizzes and ICA’s                                                     Total: 10%

Homework                                                Total: 30%

Project:                                                       Total: 20%

Midterm:                                                    Total: 15%

Final Exam:                                                Total: 20%                       

============

Grading Policy

90-100%               A

80-89.99%            B

70-79.99%            C

60-69.99%            D

0-59.99%              F

 

Please note the following:

The instructor reserves the right to adjust the grade distributions for the whole class, i.e. grade distributions will not be adjusted on an individual basis.

Final Exam 12/12/2016 3:30 - 5:30 (pm)
Submission Format Policy

As specified by the instructor in each assignment. Read the descriptions carefully when assignments/projects are released


Note: You may not submit a paper for a grade in this class that already has been (or will be) submitted for a grade in another course, unless you obtain the explicit written permission of me and the other instructor involved in advance.
Plagiarism Policy

Plagiarism is the use of someone else's thoughts, words, ideas, or lines of argument in your own work without appropriate documentation (a parenthetical citation at the end and a listing in "Works Cited")-whether you use that material in a quote, paraphrase, or summary. It is a theft of intellectual property and will not be tolerated, whether intentional or not.

Student Honor Creed

As an MSU Student, I pledge not to lie, cheat, steal, or help anyone else do so."

As students at MSU, we recognize that any great society must be composed of empowered, responsible citizens. We also recognize universities play an important role in helping mold these responsible citizens. We believe students themselves play an important part in developing responsible citizenship by maintaining a community where integrity and honorable character are the norm, not the exception.

Thus, We, the Students of Midwestern State University, resolve to uphold the honor of the University by affirming our commitment to complete academic honesty. We resolve not only to be honest but also to hold our peers accountable for complete honesty in all university matters.

We consider it dishonest to ask for, give, or receive help in examinations or quizzes, to use any unauthorized material in examinations, or to present, as one's own, work or ideas which are not entirely one's own. We recognize that any instructor has the right to expect that all student work is honest, original work. We accept and acknowledge that responsibility for lying, cheating, stealing, plagiarism, and other forms of academic dishonesty fundamentally rests within each individual student.

We expect of ourselves academic integrity, personal professionalism, and ethical character. We appreciate steps taken by University officials to protect the honor of the University against any who would disgrace the MSU student body by violating the spirit of this creed.

Written and adopted by the 2002-2003 MSU Student Senate.

Students with Disabilities

The Americans with Disabilities Act (ADA) is a federal anti-discrimination statute that provides comprehensive civil rights protection for persons with disabilities. Among other things, this legislation requires that all students with disabilities be guaranteed a learning environment that provides for reasonable accommodation of their disabilities. If you believe you have a disability requiring an accommodation, please contact the Disability Support Services in Room 168 of the Clark Student Center, (940) 397-4140.

Safe Zones Statement

The professor considers this classroom to be a place where you will be treated with respect as a human being - regardless of gender, race, ethnicity, national origin, religious affiliation, sexual orientation, political beliefs, age, or ability. Additionally, diversity of thought is appreciated and encouraged, provided you can agree to disagree. It is the professor's expectation that ALL students consider the classroom a safe environment.

Contacting your Instructor

All instructors in the Department have voicemail in their offices and MWSU e-mail addresses. Make sure you add your instructor's phone number and e-mail address to both email and cell phone lists of contacts.

Attendance Requirements

Attendance (5%) Attendance is a component of the course grade. Each student will have one unexcused absence.  Each student will begin with 100 points for their attendance grade. For each additional unexcused absence, 10 points will be subtracted from the attendance grade. Please let your instructor know if you are going to miss a class for academically related extracurricular activities. If this is the case you must present the sponsoring university member’s written justification before your absence occurs.

Other Policies

Participation includes the following:

·         Assignments given in class (a.k.a in-class activities). These will be Unannounced in nature.

·         Quizzes: a Mixed. Pop-up and Non-Pop-up quizzes. Quizzes will be used to assess students understanding of the course material.  Quizzes will be administered either at the beginning or end of class to cover the reading assignment for the lesson, homework and/or previous lessons.

·         No make-up participation assignments are given.

·         Arriving late, leaving early to class voids the right to take a quiz or ICA if it already started or it is about to start.

 

Late Policy: Submitted work is due when specified as specified (format) by the instructor. It is in the student’s best interest to keep track of all deadlines. Assignments are released ahead of time, giving the students plenty of time for their successful completion. Late assignments will be received only for 48 hours after the official deadline, at a penalty of 25 points per day. After the 48 hour window, no assignment will be accepted and a grade of zero assigned to the assignment.

 

What does it mean to be late?

Answer: assignment is due today at 8:00 am. If you deliver your report/assignment by 8:00:01 am (1 sec late) then it will be marked late.

 

VERY – VERY IMPORTANT: Before you submit any file, take your time and double OR triple check the following:

 

1.       You are uploading the correct AND all files

2.       Your work is correct at the best of your abilities

3.       Failure to fulfill (1) and (2) ON TIME, DOES NOT excuse you from a bad grade.

 

The previous rule will be strongly enforced.

 

·         If you know you will be absent ahead of time, let the instructor know, and turn your assignment in early if possible.  It is the student’s responsibility to keep track of the designated date, time.

 

 

Departmental Cheating Policy (It will be strongly enforced) | Ethical Conduct

 

Policy on Academic Honesty

The Department of Computer Science had adopted the following policy related to cheating (academic misconduct).  The policy will be applied to all instances of cheating on assignments and exams as determined by the instructor of the course.  (See below for link to MSU definitions.)

 

·         1st instance of cheating in a course: The student will be assigned a non-replaceable grade of zero for the assignment, project or exam.  In addition, the student will receive a one letter grade reduction in course.

·         2nd instance of cheating in a course: The student will receive a grade of F in course & immediately be removed from course.

·         All instances of cheating will be reported to the Department Chair and, in the case of graduate students, to the Department Graduate Coordinator.

 

Policy on Testing Process

The Department of Computer Science has adopted the following policy related to testing.

 

·         All bags, purses, electronics (turned off), books, etc. will be placed in the front of the room during exams, or in an area designated by the instructor.

·         Unless otherwise announced by the instructor, nothing is allowed on the desk but pen/pencil/eraser and test papers.

·         No student is allowed to leave the room during an exam and return.  

 

See Also:

MSU Student Handbook: Appendix E: Academic Misconduct Policy & Procedures

https://mwsu.edu/Assets/documents/student-life/2013-14-Student-Handbook.pdf

 

Attendance (5%) Attendance is a component of the course grade. Each student will have one unexcused absence.  Each student will begin with 100 points for their attendance grade. For each additional unexcused absence, 10 points will be subtracted from the attendance grade. Please let your instructor know if you are going to miss a class for academically related extracurricular activities. If this is the case you must present the sponsoring university member’s written justification before your absence occurs.

 

Classroom Civility:

All violations of classroom civility will be reported to the Dean of Students.

Students are expected to assist in maintaining a classroom environment that is conducive to learning." In order to ensure that all students gain from time spent in class, students are prohibited from engaging in any form of distraction, e.g. leaving the room for extended periods of time, reading newspapers (or other articles), working on other courses, and using cell-phones or laptops for calls or messages. If you indulge in any such inappropriate behavior (without explicit consent of the instructor), you will (at the very least) be asked to leave the classroom.

http://www.mwsu.edu/student-life/dean/

 

Student with Disabilities:

Any student who, because of a disability, may require special arrangements in order to meet the course requirements should contact the instructor as soon as possible to make any necessary arrangements. Students should present appropriate verification from disability support office during the instructor’s office hours. Please note instructors are not allowed to provide classroom accommodations to a student until appropriate verification from Disability Support Office has been provided. For additional information you may contact the Disability Support Office in Clark Student Center 168 - Phone: (940) 397-4140

 

Dean of Students:

The Dean of Students can assist in notifying the campus community of student illnesses, immediate family deaths and/or student death. Generally, in cases of student illness or immediate family deaths, the notification to the appropriate campus community members occur when a student is absent from class for four consecutive days with appropriate verification. It is the student's responsibility for missed class assignments and/or course work during their absence.

http://www.mwsu.edu/student-life/dean/

 

Tests:

Tests are comprehensive in nature. No make-up exams will be given.  If you miss an exam, you will receive a zero unless you notify the instructor in advance or demonstrate that an emergency existed that you could not circumvent (Surgery, Medical Emergency, Death in the family, and Presentation at a Conference, some others).  Students who miss an exam due to University business should notify the instructor in advance, and present the sponsoring university member’s written justification. If you do miss an exam due to University business, your final exam grade will be substituted for your excused test grade. However, this substitution can only be performed once during the semester. Exams are uniquely composed for each term.

 

Excusing Late Work

Any document used to excuse the late delivery of an assignment MUST be presented no longer than one week from the corresponding missed deadline. Valid excuses (Surgery, Medical Emergency, Death in the family, and Presentation at a Conference).   Failure to fulfill this requirement will make null the excuse, leading to a permanent grade of zero in the corresponding assignment.

 

Final Exam: There is no make-up final exam. The final exam will take place in our regular classroom. It is the student’s responsibility to keep track of the designated date, time. A complete list of all MSU exams (by time) can be found at:  https://www.mwsu.edu/Assets/documents/registrar/pdfs/Fall16finals.pdf

 

Additional Grade Policy: Once the grades, have been either returned to the students, or published via D2L, the student will have one week to examine them, and check for inconsistencies, errors, etc. After the 1-week window of opportunity all grades will become PERMANENT and WILL NOT change. It is not only the student’s responsibility to check the accuracy of his/her grades, but also in his/her best interest to do it.

This rule DOES NOT apply to the final exam because the final exam triple checked by the instructor before publishing the grade.

 

University’s Campus Carry

Senate Bill 11 passed by the 84th Texas Legislature allows licensed handgun holders to carry concealed handguns on campus, effective August 1, 2016. Areas excluded from concealed carry are appropriately marked, in accordance with state law. For more information regarding campus carry, please refer to the University’s webpage at https://mwsu.edu/campus-carry/rules-policies.

Writing Proficiency Requirement

All students seeking a Bachelor's degree from Midwestern State University must satisfy a writing proficiency requirement once they've 1) passed the 6 hours of Communication Core and and 2) earned 60 hours. You may meet this requirement by passing either the Writing Proficiency Exam or English 2113. Please keep in mind that, once you've earned over 90 hours, you lose the opportunity to take the $25 exam and have no option but to enroll in the three-credit hour course. If you have any questions about the exam, visit the Writing Proficiency Office website at https://mwsu.edu/academics/wpr, or call 397-4131.

Calendar Attachment

TopParallelDist CompGPU Programming CMPS 4563 101-20160829-094058.pdf

Campus Carry

Senate Bill 11 passed by the 84th Texas Legislature allows licensed handgun holders to carry concealed handguns on campus, effective August 1, 2016. Areas excluded from concealed carry are appropriately marked, in accordance with state law. For more information regarding campus carry, please refer to the University’s webpage at https://mwsu.edu/campus-carry/rules-policies.

If you have questions or concerns, please contact MSU Chief of Police Patrick Coggins at patrick.coggins@mwsu.edu.